Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

[detail level 1234]

▼NBamTools	Contains all BamTools classes & methods
▼NAlgorithms	Provides convenient classes & methods for working with BAM data
▼CSort	Provides classes & methods related to sorting BamAlignments
CByName	Function object for comparing alignments by name
CByPosition	Function object for comparing alignments by position
CByTag	Function object for comparing alignments by tag value
CUnsorted	Placeholder function object
CBamAlignment	The main BAM alignment data structure
CBamIndex	Provides methods for generating & loading BAM index files
CBamMultiReader	Convenience class for reading multiple BAM files
CBamReader	Provides read access to BAM files
CBamRegion	Represents a sequential genomic region
CBamWriter	Provides write access for generating BAM files
CCigarOp	Represents a CIGAR alignment operation
CCustomHeaderTag
CIBamIODevice
CRefData	Represents a reference sequence entry
CSamHeader	Represents the SAM-formatted text header that is part of the BAM file header
CSamProgram	Represents a SAM program record
CSamProgramChain	Sorted container "chain" of SamProgram records
CSamReadGroup	Represents a SAM read group entry
CSamReadGroupDictionary	Container of SamReadGroup entries
CSamSequence	Represents a SAM sequence entry
CSamSequenceDictionary	Container of SamSequence entries