Package main

Class Summary

Class	Description
Main	Class Main is the entry class for the Beagle program.
Par	Class Parameters represents the parameters for a Beagle analysis.
Pedigree	Class Pedigree stores parent-offspring relationships in a list of samples.
RunStats	Class RunStats contains methods for storing and printing statistics describing a Beagle analysis.
WindowWriter	Class WindowWriter writes VCF and IBD output data.