Uses of Class jebl.evolution.align.Output (JEBL2 lib API)

Packages that use Output

Package

Description

jebl.evolution.align

Provides classes and interfaces for pairwise alignment of two sequences.

Uses of Output in jebl.evolution.align

Subclasses of Output in jebl.evolution.align

Modifier and Type

Class

Description

class

SystemOut

Methods in jebl.evolution.align with parameters of type Output

Modifier and Type

Method

Description

void

Align.doMatch(Output out, String msg)

Print the score and the alignment

void

Align.doMatch(Output out, String msg, boolean outputFMatrix)

Print the score, the F matrix, and the alignment

abstract void

Align.printf(Output out)

Print the matrix (matrices) used to compute the alignment

void

NonOverlapMultipleLocalAffine.printf(Output out)

Print matrix used to calculate this alignment.