ClusteringTreeBuilder (JEBL2 lib API)

java.lang.Object

jebl.evolution.trees.ClusteringTreeBuilder<T>

All Implemented Interfaces:: TreeBuilder<T>

Direct Known Subclasses:: NeighborJoiningTreeBuilder

public abstract class ClusteringTreeBuilder<T extends Tree> extends Object implements TreeBuilder<T>

An abstract base class for clustering algorithms from pairwise distances

Version:: $Id: ClusteringTreeBuilder.java 662 2007-03-21 00:32:24Z twobeers $
Author:: Andrew Rambaut, Alexei Drummond, Joseph Heled Adapted from Alexei Drummond BEAST code.

Method Summary

Modifier and Type

Method

Description

void

addProgressListener(ProgressListener listener)

T

build()

void

fireSetProgress(double fractionCompleted)

static ClusteringTreeBuilder

getBuilder(TreeBuilderFactory.Method method, DistanceMatrix distances)

A factory method to create a ClusteringTreeBuilder

void

removeProgressListener(ProgressListener listener)

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details
- build
  
  public T build()
  
  Specified by:
  
  build in interface TreeBuilder<T extends Tree>
- addProgressListener
  
  public void addProgressListener(ProgressListener listener)
  
  Specified by:
  
  addProgressListener in interface TreeBuilder<T extends Tree>
- removeProgressListener
  
  public void removeProgressListener(ProgressListener listener)
  
  Specified by:
  
  removeProgressListener in interface TreeBuilder<T extends Tree>
- fireSetProgress
  
  public void fireSetProgress(double fractionCompleted)
- getBuilder
  
  public static ClusteringTreeBuilder getBuilder(TreeBuilderFactory.Method method, DistanceMatrix distances)
  
  A factory method to create a ClusteringTreeBuilder
  
  Parameters:
  
  method - build method to use.
  
  distances - Pre computed pairwise distances.
  
  Returns:
  
  A tree builder using method and distance matrix