snakemake package
=================

Subpackages
-----------

.. toctree::

    snakemake.remote
    snakemake.report

Submodules
----------

snakemake.benchmark module
--------------------------

.. automodule:: snakemake.benchmark
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snakemake.checkpoints module
----------------------------

.. automodule:: snakemake.checkpoints
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snakemake.common module
-----------------------

.. automodule:: snakemake.common
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snakemake.conda module
----------------------

.. automodule:: snakemake.conda
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snakemake.cwl module
--------------------

.. automodule:: snakemake.cwl
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snakemake.dag module
--------------------

.. automodule:: snakemake.dag
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snakemake.decorators module
---------------------------

.. automodule:: snakemake.decorators
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snakemake.exceptions module
---------------------------

.. automodule:: snakemake.exceptions
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snakemake.executors module
--------------------------

.. automodule:: snakemake.executors
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snakemake.gui module
--------------------

.. automodule:: snakemake.gui
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snakemake.io module
-------------------

.. automodule:: snakemake.io
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snakemake.jobs module
---------------------

.. automodule:: snakemake.jobs
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snakemake.logging module
------------------------

.. automodule:: snakemake.logging
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snakemake.output\_index module
------------------------------

.. automodule:: snakemake.output_index
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snakemake.parser module
-----------------------

.. automodule:: snakemake.parser
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snakemake.persistence module
----------------------------

.. automodule:: snakemake.persistence
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snakemake.rules module
----------------------

.. automodule:: snakemake.rules
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snakemake.scheduler module
--------------------------

.. automodule:: snakemake.scheduler
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snakemake.script module
-----------------------

.. automodule:: snakemake.script
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snakemake.shell module
----------------------

.. automodule:: snakemake.shell
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snakemake.singularity module
----------------------------

.. automodule:: snakemake.singularity
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snakemake.stats module
----------------------

.. automodule:: snakemake.stats
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snakemake.utils module
----------------------

.. automodule:: snakemake.utils
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snakemake.workflow module
-------------------------

.. automodule:: snakemake.workflow
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snakemake.wrapper module
------------------------

.. automodule:: snakemake.wrapper
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Module contents
---------------

.. automodule:: snakemake
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