elastix::TransformixMain Class Reference

#include <elxTransformixMain.h>

Detailed Description

A class with all functionality to configure transformix.

The TransformixMain class inherits from ElastixMain. We overwrite the Run() -function. In the new Run() the Run()-function from the ElastixTemplate-class is not called (as in elxElastixMain.cxx), because this time we don't want to start a registration, but just apply a transformation to an input image.

Definition at line 39 of file elxTransformixMain.h.

Inheritance diagram for elastix::TransformixMain:

Public Types
using	ConstPointer = itk::SmartPointer< const Self >
using	Pointer = itk::SmartPointer< Self >
using	Self = TransformixMain
using	Superclass = ElastixMain
Public Types inherited from elastix::ElastixMain
using	ArgumentMapType = Configuration::CommandLineArgumentMapType
using	ComponentDatabasePointer = ComponentDatabase::Pointer
using	ComponentDescriptionType = ComponentDatabase::ComponentDescriptionType
using	ConfigurationPointer = Configuration::Pointer
using	ConstPointer = itk::SmartPointer< const Self >
using	DataObjectContainerPointer = ElastixBase::DataObjectContainerPointer
using	DataObjectContainerType = ElastixBase::DataObjectContainerType
using	DataObjectPointer = itk::DataObject::Pointer
using	DBIndexType = ComponentDatabase::IndexType
using	FlatDirectionCosinesType = ElastixBase::FlatDirectionCosinesType
using	ImageDimensionType = ComponentDatabase::ImageDimensionType
using	ObjectContainerPointer = ElastixBase::ObjectContainerPointer
using	ObjectContainerType = ElastixBase::ObjectContainerType
using	ObjectPointer = itk::Object::Pointer
using	ParameterMapType = itk::ParameterMapInterface::ParameterMapType
using	PixelTypeDescriptionType = ComponentDatabase::PixelTypeDescriptionType
using	Pointer = itk::SmartPointer< Self >
using	PtrToCreator = ComponentDatabase::PtrToCreator
using	Self = ElastixMain
using	Superclass = itk::Object

Public Member Functions
virtual const char *	GetClassName () const
	ITK_DISALLOW_COPY_AND_MOVE (TransformixMain)
int	Run () override
int	Run (const ArgumentMapType &argmap) override
int	Run (const ArgumentMapType &argmap, const ParameterMapType &inputMap) override
int	Run (const ArgumentMapType &argmap, const std::vector< ParameterMapType > &inputMaps, itk::TransformBase *=nullptr)
virtual void	SetInputImageContainer (DataObjectContainerType *inputImageContainer)
Public Member Functions inherited from elastix::ElastixMain
virtual void	EnterCommandLineArguments (const ArgumentMapType &argmap)
virtual void	EnterCommandLineArguments (const ArgumentMapType &argmap, const ParameterMapType &inputMap)
virtual void	EnterCommandLineArguments (const ArgumentMapType &argmap, const std::vector< ParameterMapType > &inputMaps)
virtual const char *	GetClassName () const
virtual DBIndexType	GetDBIndex () const
ElastixBase &	GetElastixBase () const
unsigned int	GetElastixLevel ()
virtual ImageDimensionType	GetFixedImageDimension () const
virtual PixelTypeDescriptionType	GetFixedImagePixelType () const
virtual ImageDimensionType	GetMovingImageDimension () const
virtual PixelTypeDescriptionType	GetMovingImagePixelType () const
virtual const FlatDirectionCosinesType &	GetOriginalFixedImageDirectionFlat () const
unsigned int	GetTotalNumberOfElastixLevels ()
virtual ParameterMapType	GetTransformParametersMap () const
	ITK_DISALLOW_COPY_AND_MOVE (ElastixMain)
	itkGetModifiableObjectMacro (Configuration, Configuration)
	itkGetModifiableObjectMacro (Elastix, itk::Object)
	itkGetModifiableObjectMacro (FinalTransform, itk::Object)
	itkGetModifiableObjectMacro (FixedImageContainer, DataObjectContainerType)
	itkGetModifiableObjectMacro (FixedMaskContainer, DataObjectContainerType)
	itkGetModifiableObjectMacro (InitialTransform, itk::Object)
	itkGetModifiableObjectMacro (MovingImageContainer, DataObjectContainerType)
	itkGetModifiableObjectMacro (MovingMaskContainer, DataObjectContainerType)
	itkGetModifiableObjectMacro (ResultDeformationFieldContainer, DataObjectContainerType)
	itkGetModifiableObjectMacro (ResultImageContainer, DataObjectContainerType)
virtual int	Run ()
virtual int	Run (const ArgumentMapType &argmap)
virtual int	Run (const ArgumentMapType &argmap, const ParameterMapType &inputMap)
virtual void	SetConfiguration (Configuration *_arg)
void	SetElastixLevel (unsigned int level)
virtual void	SetFixedImageContainer (DataObjectContainerType *_arg)
virtual void	SetFixedImageDimension (ImageDimensionType _arg)
virtual void	SetFixedImagePixelType (PixelTypeDescriptionType _arg)
virtual void	SetFixedMaskContainer (DataObjectContainerType *_arg)
virtual void	SetInitialTransform (itk::Object *_arg)
virtual void	SetMaximumNumberOfThreads () const
virtual void	SetMovingImageContainer (DataObjectContainerType *_arg)
virtual void	SetMovingImageDimension (ImageDimensionType _arg)
virtual void	SetMovingImagePixelType (PixelTypeDescriptionType _arg)
virtual void	SetMovingMaskContainer (DataObjectContainerType *_arg)
virtual void	SetOriginalFixedImageDirectionFlat (const FlatDirectionCosinesType &arg)
virtual void	SetProcessPriority () const
virtual void	SetResultDeformationFieldContainer (DataObjectContainerType *_arg)
virtual void	SetResultImageContainer (DataObjectContainerType *_arg)
void	SetTotalNumberOfElastixLevels (unsigned int levels)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from elastix::ElastixMain
static const ComponentDatabase &	GetComponentDatabase ()
static Pointer	New ()

Protected Member Functions
int	InitDBIndex () override
	TransformixMain ()=default
	~TransformixMain () override
Protected Member Functions inherited from elastix::ElastixMain
virtual ObjectPointer	CreateComponent (const ComponentDescriptionType &name)
virtual ObjectContainerPointer	CreateComponents (const ComponentDescriptionType &key, const ComponentDescriptionType &defaultComponentName, int &errorcode, bool mandatoryComponent=true)
	ElastixMain ()
void	GetImageInformationFromFile (const std::string &filename, ImageDimensionType &imageDimension) const
virtual int	InitDBIndex ()
	~ElastixMain () override

Private Member Functions
int	RunWithTransform (itk::TransformBase *)

Additional Inherited Members
Protected Attributes inherited from elastix::ElastixMain
ConfigurationPointer	m_Configuration { Configuration::New() }
std::vector< ConfigurationPointer >	m_Configurations {}
DBIndexType	m_DBIndex { 0 }
ObjectPointer	m_Elastix { nullptr }
ObjectPointer	m_FinalTransform { nullptr }
DataObjectContainerPointer	m_FixedImageContainer { nullptr }
ImageDimensionType	m_FixedImageDimension { 0 }
PixelTypeDescriptionType	m_FixedImagePixelType {}
DataObjectContainerPointer	m_FixedMaskContainer { nullptr }
ObjectPointer	m_InitialTransform { nullptr }
DataObjectContainerPointer	m_MovingImageContainer { nullptr }
ImageDimensionType	m_MovingImageDimension { 0 }
PixelTypeDescriptionType	m_MovingImagePixelType {}
DataObjectContainerPointer	m_MovingMaskContainer { nullptr }
FlatDirectionCosinesType	m_OriginalFixedImageDirection {}
DataObjectContainerPointer	m_ResultDeformationFieldContainer { nullptr }
DataObjectContainerPointer	m_ResultImageContainer { nullptr }
ParameterMapType	m_TransformParametersMap {}

Member Typedef Documentation

ConstPointer

using elastix::TransformixMain::ConstPointer = itk::SmartPointer<const Self>

Definition at line 48 of file elxTransformixMain.h.

Pointer

using elastix::TransformixMain::Pointer = itk::SmartPointer<Self>

Definition at line 47 of file elxTransformixMain.h.

Self

using elastix::TransformixMain::Self = TransformixMain

Standard itk.

Definition at line 45 of file elxTransformixMain.h.

Superclass

using elastix::TransformixMain::Superclass = ElastixMain

Definition at line 46 of file elxTransformixMain.h.

Constructor & Destructor Documentation

TransformixMain()

elastix::TransformixMain::TransformixMain ( )

protecteddefault

~TransformixMain()

elastix::TransformixMain::~TransformixMain ( )

overrideprotected

Member Function Documentation

GetClassName()

virtual const char * elastix::TransformixMain::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from elastix::ElastixMain.

InitDBIndex()

int elastix::TransformixMain::InitDBIndex ( )

overrideprotectedvirtual

InitDBIndex sets m_DBIndex to the value obtained from the ComponentDatabase.

Reimplemented from elastix::ElastixMain.

ITK_DISALLOW_COPY_AND_MOVE()

elastix::TransformixMain::ITK_DISALLOW_COPY_AND_MOVE

(

TransformixMain

)

New()

static Pointer elastix::TransformixMain::New ( )

static

Method for creation through the object factory.

Run() [1/4]

int elastix::TransformixMain::Run ( )

overridevirtual

Overwrite Run() from base-class.

Reimplemented from elastix::ElastixMain.

Run() [2/4]

int elastix::TransformixMain::Run ( const ArgumentMapType &  argmap )

overridevirtual

Overwrite Run( argmap ) from superclass. Simply calls the superclass.

Reimplemented from elastix::ElastixMain.

Run() [3/4]

int elastix::TransformixMain::Run ( const ArgumentMapType &  argmap, const ParameterMapType &  inputMap  )

overridevirtual

Reimplemented from elastix::ElastixMain.

Run() [4/4]

int elastix::TransformixMain::Run	(	const ArgumentMapType &	argmap,
		const std::vector< ParameterMapType > &	inputMaps,
		itk::TransformBase *	= nullptr
	)

Run version for using transformix as library.

RunWithTransform()

int elastix::TransformixMain::RunWithTransform ( itk::TransformBase *  )

private

Does Run with an optionally specified Transform.

SetInputImageContainer()

virtual void elastix::TransformixMain::SetInputImageContainer ( DataObjectContainerType *  inputImageContainer )

virtual

Get and Set input- and outputImage.