AminoAcidScores (JEBL2 lib API)

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java.lang.Object
- jebl.evolution.align.scores.Scores
- - jebl.evolution.align.scores.AminoAcidScores

All Implemented Interfaces:

ScoreMatrix

Direct Known Subclasses:

Blosum45, Blosum50, Blosum55, Blosum60, Blosum62, Blosum65, Blosum70, Blosum75, Blosum80, Blosum85, Blosum90, Pam100, Pam110, Pam120, Pam130, Pam140, Pam150, Pam160, Pam170, Pam180, Pam190, Pam200, Pam210, Pam220, Pam230, Pam240, Pam250
```
public class AminoAcidScores
extends Scores
```
Version:

$Id: AminoAcidScores.java 360 2006-06-22 07:42:48Z pepster $

Author:

Alexei Drummond

- Field Summary
  - Fields inherited from class jebl.evolution.align.scores.Scores
    score
- Constructor Summary
  
  Constructors
  Constructor Description
  
  AminoAcidScores()
  
  AminoAcidScores(float m, float n)
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  java.lang.String getAlphabet()
  
  java.lang.String getName()
  - Methods inherited from class java.lang.Object
    equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
  - Methods inherited from class jebl.evolution.align.scores.Scores
    duplicate, forMatrix, getMatrixString, getScore, includeAdditionalCharacters, includeGaps, toString

- Constructor Detail
  - AminoAcidScores
```
public AminoAcidScores()
```
  - AminoAcidScores
```
public AminoAcidScores(float m,
                       float n)
```
- Method Detail
  - getName
```
public java.lang.String getName()
```
    Returns:
    
    human readable name
  - getAlphabet
```
public final java.lang.String getAlphabet()
```
    Returns:
    
    a string containing the valid characters for this score matrix.

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http://code.google.com/p/jebl2/