JukesCantor (JEBL2 lib API)

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java.lang.Object
- jebl.evolution.align.scores.Scores
- - jebl.evolution.align.scores.NucleotideScores
  - - jebl.evolution.align.scores.JukesCantor

All Implemented Interfaces:

ScoreMatrix
```
public class JukesCantor
extends NucleotideScores
```
Jukes Cantor assumes equal substitution frequencies and equal nucleotide equilibrium frequencies.

Version:

$Id: JukesCantor.java 319 2006-05-04 00:16:20Z matt_kearse $

Author:

Richard Moir

- Field Summary
  - Fields inherited from class jebl.evolution.align.scores.NucleotideScores
    CLUSTALW, IUB
  - Fields inherited from class jebl.evolution.align.scores.Scores
    score
- Constructor Summary
  
  Constructors
  Constructor Description
  
  JukesCantor(float d)
- Method Summary
  - Methods inherited from class jebl.evolution.align.scores.NucleotideScores
    getAlphabet, getName, toString
  - Methods inherited from class java.lang.Object
    equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
  - Methods inherited from class jebl.evolution.align.scores.Scores
    duplicate, forMatrix, getMatrixString, getScore, includeAdditionalCharacters, includeGaps

- Constructor Detail
  - JukesCantor
```
public JukesCantor(float d)
```
    Parameters:
    
    d - evolutionary distance used to calculate values

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http://code.google.com/p/jebl2/