| Package | Description |
|---|---|
| jebl.evolution.align.scores |
| Modifier and Type | Class | Description |
|---|---|---|
class |
Blosum45 |
|
class |
Blosum50 |
|
class |
Blosum55 |
|
class |
Blosum60 |
|
class |
Blosum62 |
|
class |
Blosum65 |
|
class |
Blosum70 |
|
class |
Blosum75 |
|
class |
Blosum80 |
|
class |
Blosum85 |
|
class |
Blosum90 |
|
class |
Pam100 |
|
class |
Pam110 |
|
class |
Pam120 |
|
class |
Pam130 |
|
class |
Pam140 |
|
class |
Pam150 |
|
class |
Pam160 |
|
class |
Pam170 |
|
class |
Pam180 |
|
class |
Pam190 |
|
class |
Pam200 |
|
class |
Pam210 |
|
class |
Pam220 |
|
class |
Pam230 |
|
class |
Pam240 |
|
class |
Pam250 |
| Modifier and Type | Field | Description |
|---|---|---|
static AminoAcidScores |
ScoresFactory.AMINO_ACID_IDENTITY |
| Modifier and Type | Method | Description |
|---|---|---|
static AminoAcidScores[] |
ScoresFactory.getAvailableAminoAcidScores() |
http://code.google.com/p/jebl2/