ContinuousCharacter (JEBL2 lib API)

java.lang.Object
- jebl.evolution.characters.ContinuousCharacter

All Implemented Interfaces:: Character

public class ContinuousCharacter
extends java.lang.Object
implements Character

Author:: Stephen A. Smith

Constructor Summary

Constructors
Constructor	Description
`ContinuousCharacter(java.lang.String name, java.lang.String desc)`	Constructs a basic ContinuousCharacter object with no taxa added yet
`ContinuousCharacter(java.lang.String name, java.lang.String desc, java.util.Set<Taxon> taxa)`	Constructs a basic ContinuousCharacter object with taxa added

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addTaxa(java.util.Set<Taxon> taxa)`	set the taxa for this character with a previously constructed Set
`void`	`addTaxon(Taxon taxon)`	add a taxon with this character
`java.lang.String`	`getDesc()`	return the description of the character
`java.lang.String`	`getName()`	return the name of the character
`double`	`getSE(Taxon taxon)`
`java.util.Set<Taxon>`	`getTaxa()`	get a Set of all the taxa for this character
`CharacterType`	`getType()`	return the CharacterType of the character
`java.lang.Object`	`getValue(Taxon taxon)`	get a value for a taxon containing the character
`void`	`setDesc(java.lang.String desc)`	set the description of the character
`void`	`setName(java.lang.String name)`	set the name of the character

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - ContinuousCharacter
```
public ContinuousCharacter(java.lang.String name,
                           java.lang.String desc)
```
    Constructs a basic ContinuousCharacter object with no taxa added yet
    
    Parameters:
    
    name - the name of the character
    
    desc - the description of the character
  - ContinuousCharacter
```
public ContinuousCharacter(java.lang.String name,
                           java.lang.String desc,
                           java.util.Set<Taxon> taxa)
```
    Constructs a basic ContinuousCharacter object with taxa added
    
    Parameters:
    
    name - the name of the character
    
    desc - the description of the character
    
    taxa - the Set containing the taxa
- Method Detail
  - setName
```
public void setName(java.lang.String name)
```
    Description copied from interface: Character
    
    set the name of the character
    
    Specified by:
    
    setName in interface Character
    
    Parameters:
    
    name - the name of the character
  - getName
```
public java.lang.String getName()
```
    Description copied from interface: Character
    
    return the name of the character
    
    Specified by:
    
    getName in interface Character
    
    Returns:
    
    the name of the character
  - setDesc
```
public void setDesc(java.lang.String desc)
```
    Description copied from interface: Character
    
    set the description of the character
    
    Specified by:
    
    setDesc in interface Character
    
    Parameters:
    
    desc - the description of the character
  - getDesc
```
public java.lang.String getDesc()
```
    Description copied from interface: Character
    
    return the description of the character
    
    Specified by:
    
    getDesc in interface Character
    
    Returns:
    
    the description of the character
  - getType
```
public CharacterType getType()
```
    Description copied from interface: Character
    
    return the CharacterType of the character
    
    Specified by:
    
    getType in interface Character
    
    Returns:
    
    the CharacterType of the character
  - addTaxa
```
public void addTaxa(java.util.Set<Taxon> taxa)
```
    set the taxa for this character with a previously constructed Set
    
    Parameters:
    
    taxa - a Set of the taxa containing this character
  - addTaxon
```
public void addTaxon(Taxon taxon)
```
    Description copied from interface: Character
    
    add a taxon with this character
    
    Specified by:
    
    addTaxon in interface Character
    
    Parameters:
    
    taxon - the taxon to add containing the character
  - getValue
```
public java.lang.Object getValue(Taxon taxon)
```
    Description copied from interface: Character
    
    get a value for a taxon containing the character
    
    Specified by:
    
    getValue in interface Character
    
    Parameters:
    
    taxon - the taxon to get the value for
    
    Returns:
    
    the Object value of the character for the given taxon
  - getSE
```
public double getSE(Taxon taxon)
```
    Parameters:
    
    taxon - the taxon for which to get the standard error
    
    Returns:
    
    double of the standard error for the taxon
  - getTaxa
```
public java.util.Set<Taxon> getTaxa()
```
    Description copied from interface: Character
    
    get a Set of all the taxa for this character
    
    Specified by:
    
    getTaxa in interface Character
    
    Returns:
    
    a Set containing all of the taxa for this character

Class ContinuousCharacter

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

ContinuousCharacter

ContinuousCharacter

Method Detail

setName

getName

setDesc

getDesc

getType

addTaxa

addTaxon

getValue

getSE

getTaxa