| Package | Description |
|---|---|
| jebl.evolution.coalescent |
| Modifier and Type | Class | Description |
|---|---|---|
class |
Intervals |
A concrete class for a set of coalescent intevals.
|
| Modifier and Type | Method | Description |
|---|---|---|
static double |
Coalescent.calculateAnalyticalLogLikelihood(IntervalList intervals) |
Calculates the log likelihood of this set of coalescent intervals,
using an analytical integration over theta.
|
static double |
Coalescent.calculateLogLikelihood(IntervalList intervals,
DemographicFunction demographicFunction) |
Calculates the log likelihood of this set of coalescent intervals,
given a demographic model.
|
static int |
IntervalList.Utils.getLineageCount(IntervalList intervals,
double t) |
| Constructor | Description |
|---|---|
Coalescent(IntervalList intervals,
DemographicFunction demographicFunction) |
http://code.google.com/p/jebl2/