AminoAcidState (JEBL2 lib API)

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java.lang.Object
- jebl.evolution.sequences.State
- - jebl.evolution.sequences.AminoAcidState

All Implemented Interfaces:

java.lang.Comparable
```
public final class AminoAcidState
extends State
```
Version:

$Id: AminoAcidState.java 986 2009-03-10 01:00:03Z matt_kearse $

Author:

Andrew Rambaut, Alexei Drummond

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`compareTo(java.lang.Object o)`
`java.lang.String`	`getThreeLetterName()`
`boolean`	`isGap()`
`boolean`	`isStop()`

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from class jebl.evolution.sequences.State
fractionEqual, getCanonicalStates, getCode, getFullName, getIndex, getName, isAmbiguous, possiblyEqual, toString

- Method Detail
  - compareTo
```
public int compareTo(java.lang.Object o)
```
    Specified by:
    
    compareTo in interface java.lang.Comparable
    
    Overrides:
    
    compareTo in class State
  - getThreeLetterName
```
public java.lang.String getThreeLetterName()
```
    Returns:
    
    the 3 letter name for this amino acid. E.g "Ala" for "Alanine".
  - isGap
```
public boolean isGap()
```
    Specified by:
    
    isGap in class State
  - isStop
```
public boolean isStop()
```

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http://code.google.com/p/jebl2/