| Package | Description |
|---|---|
| jebl.evolution.align.scores | |
| jebl.evolution.substmodel |
| Constructor | Description |
|---|---|
SubstScoreMatrix(RateMatrix rateMatrix) |
| Modifier and Type | Class | Description |
|---|---|---|
class |
AbstractRateMatrix |
abstract base class for all rate matrices
|
class |
AminoAcidModel |
base class of rate matrices for amino acids
|
class |
WAG |
WAG model of amino acid evolution (S.
|
| Modifier and Type | Method | Description |
|---|---|---|
void |
MatrixExponential.setMatrix(RateMatrix r) |
update rate matrix used in present module
|
| Constructor | Description |
|---|---|
MatrixExponential(RateMatrix r) |
create module
|
http://code.google.com/p/jebl2/