Package org.snpsift.testCases.unit

Class TestCasesFilterChrPos

  • public class TestCasesFilterChrPos
extends java.lang.Object
    Test cases for SnpSift filterChrPos
    Author:
    pcingola

    • Field Summary

      Fields 
      Modifier and Type Field Description
      static boolean debug  
      protected java.lang.String[] defaultExtraArgs  
      static boolean verbose  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      protected java.lang.String[] argsList​(java.lang.String chrPosFileName, java.lang.String vcfFileName, java.lang.String[] extraArgs)  
      void filter​(java.lang.String dbFileName, java.lang.String fileName, int expectedCount)  
      java.util.List<org.snpeff.vcf.VcfEntry> filter​(java.lang.String chrPosFileName, java.lang.String vcfFileName, java.lang.String[] extraArgs, int expectedCount)
      Filter
      void test_01()  
      void test_02()  
      void test_03()  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Field Detail

      • debug

        public static boolean debug

      • verbose

        public static boolean verbose

      • defaultExtraArgs

        protected java.lang.String[] defaultExtraArgs

    • Constructor Detail

      • TestCasesFilterChrPos

        public TestCasesFilterChrPos()

    • Method Detail

      • argsList

        protected java.lang.String[] argsList​(java.lang.String chrPosFileName,
                                      java.lang.String vcfFileName,
                                      java.lang.String[] extraArgs)

      • filter

        public void filter​(java.lang.String dbFileName,
                   java.lang.String fileName,
                   int expectedCount)

      • filter

        public java.util.List<org.snpeff.vcf.VcfEntry> filter​(java.lang.String chrPosFileName,
                                                      java.lang.String vcfFileName,
                                                      java.lang.String[] extraArgs,
                                                      int expectedCount)
        Filter

      • test_01

        public void test_01()

      • test_02

        public void test_02()

      • test_03

        public void test_03()